[Q] Regarding Kernel Changes on Paranoid Android RC 3.99.1 - Nexus 4 Q&A, Help & Troubleshooting

Hi,
Because of the following kernel changes see below.. Do i need to flash pa_mako-Kernel-4.3_JWR66V_HALFBREED.zip before i use any other custom kernel? I only prefer Semaphore or franco as my kernel because it does not touch any of the /system files. For example Semaphore uses the stock Thermal Control and then my question is how it would be the cause or effect? If i flash Semaphore kernel and then it would still use showp1984 Thermal Control? Is there any conflict on that? This is very confusing. Thanks for replies in advance.
Here are the Stock Kernel Changes on Paranoid Android 3.99.1:
-Added intelli-demand
-showp1984's Thermal Control & mpdecision.
Regards,

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